get_intron_flanks {BUSpaRse} | R Documentation

## Get flanked intronic ranges

### Description

Get flanked intronic ranges

### Usage

    get_intron_flanks(grl, L, get_junctions)

### Arguments

`grl` | A `CompressedGRangesList` for exonic ranges, each element for one transcript.
`L` | Read length.
`get_junctions` | Logical, whether to also return exon-exon junctions.

### Value

If `get_junctions` is `FALSE`, then a `GRanges` object with ranges for flanked intronic regions. If `get_junctions` is `TRUE`, then in addition to the flanked intronic ranges, a `CompressedGRangesList` with exon-exon junction ranges and ranges for transcripts without introns.

[Package BUSpaRse version 1.1.1 Index]