plot-BASiCS_Chain-method {BASiCS} | R Documentation

## 'plot' method for BASiCS_Chain objects

### Description

'plot' method for `BASiCS_Chain` objects

### Usage

    ## S4 method for signature 'BASiCS_Chain,ANY'
    plot(
      x,
      Param = "mu",
      Gene = NULL,
      Cell = NULL,
      Batch = 1,
      RegressionTerm = NULL,
      ...
    )

### Arguments

`x` | A `BASiCS_Chain` object.
`Param` | Name of the slot to be used for the plot. Possible values: `'mu'`, `'delta'`, `'phi'`, `'s'`, `'nu'`, `'theta'`, `'beta'`, `'sigma2'` and `'epsilon'`.
`Gene` | Specifies which gene is requested. Required only if `Param = 'mu'` or `'delta'`
`Cell` | Specifies which cell is requested. Required only if `Param = 'phi', 's'` or `'nu'`
`Batch` | Specifies which batch is requested. Required only if `Param = 'theta'`
`RegressionTerm` | Specifies which regression coefficient is requested. Required only if `Param = 'beta'`
`...` | Unused.

### Value

A plot object

### Author(s)

Catalina A. Vallejos cnvallej@uc.cl

Nils Eling eling@ebi.ac.uk

### Examples

    help(BASiCS_MCMC)

[Package BASiCS version 1.99.1 Index]