fragSizeDist {ATACseqQC} | R Documentation

## fragment size distribution

### Description

estimate the fragment size of bams

### Usage

    fragSizeDist(
      bamFiles,
      bamFiles.labels,
      index = bamFiles,
      ylim = NULL,
      logYlim = NULL
    )

### Arguments

`bamFiles` | A vector of characters indicates the file names of bams.
`bamFiles.labels` | labels of the bam files, used for pdf file naming.
`index` | The names of the index file of the 'BAM' file being processed; This is given without the '.bai' extension.
`ylim` | numeric(2). ylim of the histogram.
`logYlim` | numeric(2). ylim of log-transformed histogram for the insert.

### Value

Invisible fragment length distribution list.

### Author(s)

Jianhong Ou

### Examples

    bamFiles <- dir(system.file("extdata", package="ATACseqQC"), "GL.*.bam$", full.names=TRUE)
    bamFiles.labels <- sub(".bam", "", basename(bamFiles))
    fragSizeDist(bamFiles, bamFiles.labels)

[Package ATACseqQC version 1.11.8 Index]