GSE114922.psi {ASpediaFI} | R Documentation

## Example dataset containing PSI values

### Description

A SummarizedExperiment containing PSI values of 5,000 AS events. We downloaded RNA-Seq reads of 82 MDS patients from GEO database (GSE114922), aligned with STAR, and computed PSI values using rMATS. AS events with a lot of missing values or extreme values, or those on genes with low expression were filtered out and 5,000 most variable AS events were selected.

### Usage

    GSE114922.psi

### Format

An object of class `SummarizedExperiment` with 10000 rows and 40 columns.

### References

Pellagatti, A. et al. (2018). Impact of spliceosome mutations on RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical associations. Blood, 132.

### Examples

    data(GSE114922.psi)

[Package ASpediaFI version 1.1.4 Index]