annotateASevents {ASpediaFI} | R Documentation

## AS event annotation

### Description

Detect and annotate AS events from GTF. This function borrows code from the `IVAS` package.

### Usage

    annotateASevents(object, gtf.file, num.cores = 1)

### Arguments

`object` | Object of class ASpediaFI
`gtf.file` | an input GTF file
`num.cores` | the number of cores for parallel processing

### Value

ASpediaFI object with a list of AS event annotations

### References

Han, S. et al. (2017). Genome wide discovery of genetic variants affecting alternative splicing patterns in human using bioinformatics method. Genes & Genomics, 39.

### Examples

    fi <- new('ASpediaFI')
    gtf <- system.file('extdata/GRCh38.subset.gtf', package = 'ASpediaFI')
    fi <- annotateASevents(fi, gtf.file = gtf, num.cores = 1)
    sapply(events(fi), length)
    head(events(fi)$SE)

[Package ASpediaFI version 1.1.4 Index]