APABox {APAlyzer} | R Documentation

## APABox, APA RED Box plotting

### Description

APA RED Box plotting

### Usage

    	APABox (df, xlab = "APAreg", ylab = "RED",
    						plot_title = NULL)

### Arguments

`df` | a dataframe of APAdiff output
`xlab` | lable of x-axis, default is 'APAreg'
`ylab` | lable of y-axis, default is 'RED'
`plot_title` | Main title of plot

### Value

The function `APABox` return a Box plot.

### Author(s)

Ruijia Wang

### Examples

        library("TBX20BamSubset")
        library("Rsamtools")
        flsall = getBamFileList()
        extpath = system.file("extdata",
        "mm9_TBX20.APAout.RData", package="APAlyzer")
        load(extpath)
        sampleTable1 = data.frame(samplename = c(names(flsall)),
            condition = c(rep("NT",3),rep("KD",3)))
        sampleTable2 = data.frame(samplename = c("SRR316184","SRR316187"),
            condition = c("NT","KD"))
        ## 3'UTR APA plot
        test_3UTRmuti=APAdiff(sampleTable1,DFUTRraw,
        conKET='NT',trtKEY='KD',PAS='3UTR',CUTreads=0)
    	UTR_APA_PLOTBOX=APABox(test_3UTRmuti, plot_title='3UTR APA')

        ## IPA plot
        test_IPAmuti=APAdiff(sampleTable1,IPA_OUTraw,
        conKET='NT',trtKEY='KD',PAS='IPA',CUTreads=0)
    	IPA_PLOTBOX=APABox(test_IPAmuti, plot_title='IPA')

[Package APAlyzer version 1.1.2 Index]