parentChild-class {topGO} | R Documentation

## Classes "parentChild" and "pC"

### Description

Classes that extend the "classicCount" class by adding support for the parent-child test.

### Objects from the Class

Objects can be created by calls of the form `new("parentChild", testStatistic, name, groupMembers, parents, sigMembers, joinFun, ...)`.

### Slots

`splitIndex`:

  Object of class `"integer"` ~~

`joinFun`:

  Object of class `"character"` ~~

`significant`:

  Object of class `"integer"` ~~

`name`:

  Object of class `"character"` ~~

`allMembers`:

  Object of class `"character"` ~~

`members`:

  Object of class `"character"` ~~

`testStatistic`:

  Object of class `"function"` ~~

`testStatPar`:

  Object of class `"list"` ~~

### Extends

Class `"classicCount"`, directly. Class `"groupStats"`, by class "classicCount", distance 2.

### Methods

allMembers<-

  `signature(object = "parentChild")`: ...

allMembers

  `signature(object = "parentChild")`: ...

allParents

  `signature(object = "parentChild")`: ...

getSigGroups

  `signature(object = "topGOdata", test.stat = "parentChild")`: ...

initialize

  `signature(.Object = "parentChild")`: ...

joinFun

  `signature(object = "parentChild")`: ...

numAllMembers

  `signature(object = "parentChild")`: ...

numSigAll

  `signature(object = "parentChild")`: ...

sigAllMembers

  `signature(object = "parentChild")`: ...

sigMembers<-

  `signature(object = "parentChild")`: ...

updateGroup

  `signature(object = "parentChild", name = "missing", members = "character")`: ...

### Author(s)

Adrian Alexa

### See Also

`classicCount-class`, `groupStats-class`, `getSigGroups-methods`

### Examples

    showClass("parentChild")
    showClass("pC")

[Package topGO version 2.40.0 Index]