real_transcripts {target} | R Documentation

## Differential expression of DHT treated LNCaP cell line

### Description

The differential expression analysis output of LNCaP cell line treated with DHT for 16 hours compared to non-treated cells. The REFSEQ transcript identifiers were used to merge the data.frame with the transcript coordinates from the hg19 reference genome.

### Usage

    real_transcripts

### Format

A `GRanges`

### Source

https://github.com/suwangbio/BETA/blob/master/BETA_test_data/AR_diff_expr.xls

https://github.com/suwangbio/BETA/blob/master/BETA_1.0.7/BETA/references/hg19.refseq

### See Also

`real_peaks`

`sim_transcripts`

### Examples

    # load data
    data('real_transcripts')

    # locate the raw data
    system.file('extdata', 'AR_diff_expr.tsv.gz', package = 'target')
    system.file('extdata', 'hg19.refseq', package = 'target')

    # locate the source code for preparing the data
    system.file('extdata', 'make-data.R', package = 'target')

[Package target version 1.2.0 Index]