plotWF {systemPipeR} | R Documentation

## Graphviz Plot Workflow

### Description

Graphviz Plot Workflow

### Usage

    plotWF(sysargslist, plot_style = "detect", out_type = "html", out_path = "default", height = NULL, width = NULL)

### Arguments

`sysargslist` | data frame, the standard df generated from subsetRmd function
`plot_style` | one of 'detect', 'none', 'linear'
`out_type` | choose from 'html', 'svg', 'png'
`out_path` | string, path of output plot, only apply from svg or png
`height` | int, height of svg or png in pixels, default NULL, automatic
`width` | int, width of svg or png in pixels, default NULL, automatic

### Author(s)

Le Zhang and Daniela Cassol

### Examples

    ## Not run:
    ## Construct SYSargsList object from Rmd file
    library(systemPipeRdata)
    script <- system.file("extdata/workflows/rnaseq", "systemPipeRNAseq.Rmd", package="systemPipeRdata")
    targets <- system.file("extdata", "targets.txt", package="systemPipeR")
    dir_path <- tempdir()
    SYSconfig <- initProject(projPath=dir_path, targets=targets, script=script, overwrite = TRUE)
    sysargslist <- initWF(sysconfig ="SYSconfig.yml")
    plotWF(sysargslist, plot_style = "none", out_type = "png")

    ## End(Not run)

[Package systemPipeR version 1.22.0 Index]