moduleload {systemPipeR} | R Documentation

## Interface to module system

### Description

Functions to list and load software from a module system in R. The functions are the equivalent of `module avail` and `module load` on the Linux command-line, respectively.

### Usage

    moduleload(module, envir="PATH")

    modulelist()

### Arguments

`module` | Name of software to load character vector.
`envir` | One or many environment variables passed on as character vector.

### Author(s)

Tyler Backman and Thomas Girke

### Examples

    ## Not run:
    ## List all software from module system
    modulelist()

    ## Examples for loading software from module system
    moduleload(module="bowtie2/2.0.6", envir="PATH")
    moduleload(module="python", envir=c("PATH", "LD_LIBRARY_PATH", "PYTHONPATH"))

    ## End(Not run)

[Package systemPipeR version 1.22.0 Index]