getRefSet {sesame} | R Documentation

## Retrieve reference set

### Description

The function retrieves the curated reference DNA methylation status for a set of cell type names under the Infinium platform. Supported cell types include "CD4T", "CD19B", "CD56NK", "CD14Monocytes", "granulocytes", "scFat", "skin" etc. See package sesameData for more details. The function output a matrix with probes on the rows and specified cell types on the columns. 0 suggests unmethylation and 1 suggests methylation. Intermediate methylation and nonclusive calls are left with NA.

### Usage

    getRefSet(cells = NULL, platform = c("EPIC", "HM450"))

### Arguments

`cells` | reference cell types
`platform` | EPIC or HM450

### Value

g, a 0/1 matrix with probes on the rows and specified cell types on the columns.

### Examples

    betas <- getRefSet('CD4T', platform='HM450')

[Package sesame version 1.6.0 Index]