inferSexKaryotypes {sesame} | R Documentation

## Infer Sex Karyotype

### Description

The function takes a `SigSet` and infers the sex chromosome Karyotype and presence/absence of X-chromosome inactivation (XCI). chrX, chrY and XCI are inferred relatively independently. This function gives a more detailed look of potential sex chromosome aberrations.

### Usage

    inferSexKaryotypes(sset)

### Arguments

`sset` | a `SigSet`

### Value

Karyotype string, with XCI

### Examples

    sset <- sesameDataGet('EPIC.1.LNCaP')$sset
    inferSexKaryotypes(sset)

[Package sesame version 1.6.0 Index]