81de06a643337740ed42265dd70c685c *DESCRIPTION
900680b0d4cbc3e877c83f0c40825892 *INDEX
109d4496bbfe0fa5e6f90565cc8ee85b *Meta/Rd.rds
82ae14c82d2d7f344ac9768a2908adb1 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
9826a73ca96bdfe31a7da1782c776788 *Meta/hsearch.rds
5cc3374f7f660c93d6558801aeb8f66e *Meta/links.rds
3865bf091fe8b08467f57311ba3b3e91 *Meta/nsInfo.rds
7876ce5a572bac00540ba99d9dea0171 *Meta/package.rds
e3160a0b2b9dcff266e17db24df9b3d9 *Meta/vignette.rds
745a248d66abbd2455d3fbd851723b27 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/segmentSeq
f9ab3bc92d1f01807a7aa3fd88576369 *R/segmentSeq.rdb
2ed4570f2909088782d1d1108d8ada52 *R/segmentSeq.rdx
e0fdeb3e6f073566bf1115a64d7ebeda *data/hSL.RData
aa64b9983d25a48733870ed50d1b6b77 *doc/index.html
15f4c7df8fd84000cb3a9bf405b4e688 *doc/methylationAnalysis.R
5f7a9bccf604aff19003d3e514230544 *doc/methylationAnalysis.Rnw
1c6fa76b7765e5ddf440d38623d86277 *doc/methylationAnalysis.pdf
2177f37f8db17c1eaa5773248b58431d *doc/segmentSeq.R
dc3e5ea6060691ece51c17a273a3b0b5 *doc/segmentSeq.Rnw
26756c14e9524fa2f6ae0f10b2a8f1e9 *doc/segmentSeq.pdf
3e06d773f7fc796b9f8abfbd87859c91 *extdata/SL10.txt
d4614b7e3a4b1d43982ddfb5756b3c55 *extdata/SL26.txt
b743c46dcbdbebc79f25c8402c664099 *extdata/SL32.txt
557c9c052a14cbeb5794a5d40520ee98 *extdata/SL9.txt
f9e97daa13b3f4e7b2554cfc838e20b6 *extdata/short_13_C24_col_trim.fastq_CG_methCalls.gz
6202ab9dfdfca80c02a65f4e6bb528fa *extdata/short_18B_C24_C24_trim.fastq_CG_methCalls.gz
67b74bf8edfa841d34a31dfd467c8c3f *extdata/short_Sample_17A_trimmed.fastq_CG_methCalls.gz
87ff08b3a90565b2d8b826373e30dc0e *extdata/short_Sample_28_trimmed.fastq_CG_methCalls.gz
980b344cf620586acacd236f46a7a13c *help/AnIndex
8b260a699755d9b2f143b02de0fd6e57 *help/aliases.rds
b0e1ddf3678eba3411473bb51e769b6c *help/paths.rds
b905cb2735f2a30f9ced5a7062289842 *help/segmentSeq.rdb
4d94e7e13f65ba7e5e29bc673d2cf42d *help/segmentSeq.rdx
4f0f83d0471c86d309fd0aa86ae83aa5 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0293f785cd1e1d845f8b2c5ba9bef828 *html/SL.html
6b9d4c133ca72980e4e0631fc2f35af8 *html/alignmentClass-class.html
836e210689ebd86dbea8d4876f80fa92 *html/alignmentData-class.html
b4999780f8fa97dfb583837bd9eabbf0 *html/alignmentMeth-class.html
03108dfeb5774deedba231b58266f74e *html/averageMethylationRegions.html
76d01d8e6e6e27b65a498bbc1dd7d60e *html/classifySeg.html
70d6eea4c5d6f1c9bf54247784a214d8 *html/findChunks.html
2407330baac2362d74a3389a16245d1f *html/getCounts.html
3ca29309e40cf4c922c77e3c093f35ed *html/getOverlaps.html
3cc6fbc82596d6970483f430c66914f9 *html/givenExpression.html
1bd94f744112215a1509cab3ed5ccfd3 *html/hSL.html
b7503911e40d8d62fa4748ff88a51805 *html/heuristicSeg.html
aa887d5f8a22d8c1e6fe026f6880d67b *html/lociData-class.html
b671353dab3e4adc0e0fd6adb3b71d9f *html/lociLikelihoods.html
6829703a5f1ee4031df52d4f8ff2e100 *html/mergeMethSegs.html
c67842bc61ac652c0823e818d0a147d1 *html/methData-class.html
ce5b24934e7a5831719a60755654fac2 *html/normaliseNC.html
f1523fe817fd7804dab19134baa7796f *html/plotGenome.html
905cba8a99e919f4d75359129a083b29 *html/plotMeth.html
643884c75e961b818f3400f78a596ac5 *html/plotMethDistribution.html
25e41905c37db0ebed807f16c0206a0a *html/processAD.html
b9897427bff895938a646693c92dd984 *html/readMethods.html
557707a864fe1e3ff98eaed4381db52f *html/readMeths.html
17209f7423cb990ea1df422841d1d974 *html/segClass-class.html
db3fb555120e35a6bf8c015256809edd *html/segData-class.html
9453aa1496a8e6b13cd1962634b23afb *html/segMeth-class.html
9670923c0405825a8d92a0a01f4c03f0 *html/segmentSeq-package.html
db6004c779edc34c944aa3ffc1471cad *html/selectLoci.html
4345ae42145c027c26d0fc149c511322 *html/summariseLoci.html
cbdf09bd3374bcb815462a3bd5b25f89 *html/thresholdFinder.html
