calcTGIF {scTGIF} | R Documentation

## Function for connecting cellular patterns and functional patterns using jNMF

### Description

`calcTGIF` function calculates what kind of cellular patterns and functional patterns are contained in single-cell RNA-seq data and `reportTGIF` function generates report of analytic result.

### Usage

    calcTGIF(sce, ndim, verbose=FALSE, droplet=TRUE)

### Arguments

`sce` | A object generated by instantization of SingleCellExperiment-class.
`ndim` | The number of low-dimension of joint NMF algorithm.
`verbose` | The verbose parameter for nnTensor::jNMF (Default: FALSE).
`droplet` | Whether Droplet-based single-cell RNA-Seq or not (Default: TRUE).

### Value

The result is saved to metadata slot of SingleCellExperiment object.

### Author(s)

NA

### Examples

    showMethods("calcTGIF")

[Package scTGIF version 1.2.2 Index]