qual_score_per_read {qckitfastq} | R Documentation

## Calculate the mean quality score per read of the FASTQ gzipped file

### Description

Calculate the mean quality score per read of the FASTQ gzipped file

### Usage

    qual_score_per_read(infile)

### Arguments

`infile` | A string giving the path for the fastqfile

### Value

mean quality per read

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
    qual_score_per_read(infile)$q50_per_position[1:10]

[Package qckitfastq version 1.4.0 Index]