plot_read_content {qckitfastq} | R Documentation

## Plot the per position nucleotide content.

### Description

Plot the per position nucleotide content.

### Usage

    plot_read_content(read_content, output_file = NA)

### Arguments

`read_content` | Data frame produced by read_content function.
`output_file` | File to save plot to. Will not write to file if NA. Default NA.

### Value

ggplot line plot of all nucleotide content inclding A, T, G, C and N

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
    fseq <- seqTools::fastqq(infile,k=6)
    read_content <- read_content(fseq)
    plot_read_content(read_content)

[Package qckitfastq version 1.4.0 Index]