ca42bb40d663ed605d7a17b44a6a1997 *DESCRIPTION
b57f1f87aaa983fa238ab1a4c1216bf7 *INDEX
684d18c6ba5cac6bf0e08466882daa94 *Meta/Rd.rds
5777b4db8537c1e5abf5be31ce03981a *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
b3edd482771e3ef4df7b0a2bcf394408 *Meta/hsearch.rds
97cfecf377d889a6020506acbb27e1ad *Meta/links.rds
a481d6fd31d8e7fe73f39780d4bc0fc8 *Meta/nsInfo.rds
cc68d554662654298ff3b460d201631b *Meta/package.rds
b2aafabe6ced42d94d2a426eff296bcf *NAMESPACE
594c0d4f02b79551b089be17d3c83296 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/pwOmics
ea3ae3e649432999a664b81dae8266e3 *R/pwOmics.rdb
9c1394793eaca731ec26945f9cfcdd74 *R/pwOmics.rdx
62f1951990e4a48b8e9576a63de2a20d *data/OmicsExampleData.RData
0173a6340a384e4863487ec72a92f25c *extdata/Genelists/Genelist_biocarta.RData
8ce73f94923b113e1b37341189cc1fa5 *extdata/Genelists/Genelist_kegg.RData
3966ca5db8518cdf31378969a73c53e7 *extdata/Genelists/Genelist_nci.RData
9f57a879f9965936a1ae43478a963a13 *extdata/Genelists/Genelist_reactome.RData
8212a0c9e1ddcbd8edbc9037b606eca5 *extdata/TF_targets.txt
98b206046ac2e5a7723f5b450b628003 *extdata/chea-background.csv
e179e6d1de61e0f377aef5c587e79401 *extdata/mat_phospho.csv
cbff0dfb526df4226b5903b7443c06f6 *extdata/phospho_anno.txt
1bfd415c150f248004e280346bdcd2fc *extdata/phospho_reg_table.txt
52bfb1275c60a7e2e3b2bbbb1bb348fd *extdata/transcriptome_signif.txt
c0a168a7153f25de41757b7fd6b64472 *help/AnIndex
c2f66cafa13bc4dfc26c9e22ffcdb3ee *help/aliases.rds
c8e61c40bd68e42c84cda5a4c2c13ea3 *help/paths.rds
748d479142f0029bdd8a32af8a0788e9 *help/pwOmics.rdb
1798639caea1f5e9c07633f21533842e *help/pwOmics.rdx
9b599368d093da5c2220adf2b4829607 *html/00Index.html
9a75c9bc5e5e700e569fee8a177b4ee6 *html/OmicsExampleData.html
a19d1578de4712687948ed97d8bd5332 *html/PWidentallprots.html
96010d159dfc7e3ea1e5df97f57c264a *html/PWidentallprotssub.html
33427820a3b07d59910193ca6cf24227 *html/PWidenttps.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
0dc443c24dd9fe63e8bbe2c203cc28f4 *html/SteinerTree_cons.html
58ee72e517d4061ed356f1272ca68453 *html/TFidentallgenes.html
bcbf1e50cf74640e6efa857877040e3c *html/TFidenttps.html
57eb57801e1aee565826555e873798aa *html/addFeedbackLoops.html
d34f5fd310ea3dd1eb4f58a97f54b071 *html/clusterTimeProfiles.html
bd67f9c6b4fc3ed29a8c5755d01c6270 *html/consDynamicNet.html
324296adc4f2298bf355a783aacac55f *html/createBiopaxnew.html
5f87ed3f4bf2f0744ff21f26fc238a01 *html/createIntIDs.html
1d28a706b9a0de2444807bf932af80ce *html/findSignalingAxes.html
979240c02df4ab2330c9cac63a4cba62 *html/findxneighborsoverlap.html
df41eeefafaf3a5d53cc67ae23046ec9 *html/findxnextneighbors.html
56a9e384cc39e985b26789ff86968c9a *html/genGenelists.html
cb9b543b595ccb700c4396ddc953a868 *html/genGenelistssub.html
2788057567e4c97f8c22d336d33bec7f *html/genIntIDs.html
f977665bcfe33edaee5d8d01a650b775 *html/generate_DSSignalingBase.html
9c6fed7fc536cff1bc11e6c5bb2eaa28 *html/genfullConsensusGraph.html
e964a246e169232e4ea0e208046b3179 *html/getAlias_Ensemble.html
739d402e80bae60f6ef7531294c40b46 *html/getAliasfromSTRINGIDs.html
73939acf71d84a17f7f25ef6ba378271 *html/getBiopaxModel.html
2e6b91b7397f5d8d8d49434ded5466db *html/getConsensusSTRINGIDs.html
bf4ec9fb56037ba1c8d8ec6be6629e47 *html/getDS_PWs.html
8f6f642c4607452a2d568ccde79371aa *html/getDS_TFs.html
195067f92bf83cd20993962aee53d2df *html/getDS_TGs.html
6c5ef3164499122ebd0e9ffdd41fd96a *html/getFCsplines.html
e96e2699cbf624617ed0945f8b0564b6 *html/getGenesIntersection.html
097d1a0458daa2b471314c32db24e990 *html/getOmicsDataset.html
5c216c32ced2b68215c93323fd005a7e *html/getOmicsTimepoints.html
28e22b026ec63fdb1bf0ef0a2f98b3ff *html/getOmicsallGeneIDs.html
2d09c36f6e0c9655f810665f3072dd40 *html/getOmicsallProteinIDs.html
fd8456718d0e01e001bbb56f745ca8ed *html/getProteinIntersection.html
7ed0c297e776d2c5e4cf35a40498da13 *html/getSTRING_graph.html
8855166bf609fd3b9ed076e43a48a6f4 *html/getTFIntersection.html
a642d698b17af3e0f2d602ca36f99af1 *html/getUS_PWs.html
5e9fde6bd0de0f04c49664879a4ec809 *html/getUS_TFs.html
a72bc67c0e89e8b2af4839409a0b2165 *html/getUS_regulators.html
07acaefb97722b1fa7d85c952f2bb857 *html/get_matching_transcripts.html
bcf5f2ee8f0f1bc12a1ffc06e8ad8954 *html/getbipartitegraphInfo.html
f59dad8aa529d470ec44f20989faaaec *html/gettpIntersection.html
00e86b483c122bc9882084c8db4c35ec *html/identPWsofTFs.html
aa55bbfb1cfec427ce78d4d3565ef07c *html/identRegulators.html
26f5288e0611fb3a9bf80ef569241d98 *html/identTFTGsinPWs.html
4c6fe4aba43712c25dfe510c9d2a4b5b *html/identTFs.html
49c32eed750e1e5a14578ea13ed4019a *html/identifyPR.html
adbffc2053e0d4e2dbe4beea45ef0c2c *html/identifyPWTFTGs.html
007c70279b2e4c8f19916e7d1a337f48 *html/identifyPWs.html
d7066aef1583d1b0ce84d5143070fbe4 *html/identifyRsofTFs.html
8982a6f2f328e89d82b42dfe6c25f951 *html/identifyTFs.html
96038cb1f9834ebb281690d7958393a6 *html/infoConsensusGraph.html
ad4c1be8cc79ec5486288f9fb134a0d3 *html/loadGenelists.html
2ec4e7220a1a847b33f14300453a69fd *html/loadPWs.html
d906e6629334277f99ea3e10ce661b97 *html/plotConsDynNet.html
920f899f32ee0bea70d392cd163656f7 *html/plotConsensusGraph.html
7f333024c34abe8b794f6b26d34224f3 *html/plotConsensusProfiles.html
3870a6b285b60b4193822aa4ccbc9683 *html/plotTimeProfileClusters.html
f8f2e29a0141aa8be4e19cc9c2621d97 *html/predictFCvals.html
b9bbe31dc8d35bb65e49d9e9ede26265 *html/preparePWinfo.html
6dd17663ac370d30e74488f0b2b4bccf *html/print.OmicsData.html
aaed27f7279ab281f05df145707f8b62 *html/pwIntOmics-package.html
47af8ec7cee6935e74a26858b9158292 *html/readOmics.html
659a21ea9dc0a0895df06ce58609426f *html/readPWdata.html
c24453df0d9f7477afc202f1f20c9fc9 *html/readPhosphodata.html
2a05439060c8afa83969898e0d966465 *html/readTFdata.html
a50cbb48f2df665d3b808a6a22f30f6c *html/readTFtargets.html
b8226daaf45707e7061858716d9fb58b *html/selectPWsofTFs.html
3baa7d6ce2c8c8d230c5bbe3cbefa934 *html/staticConsensusNet.html
af02de9ed22a56b9714316f2e2412ba0 *html/temp_correlations.html
122cc06fcca219f21a1377b9d567c51e *unitTests/provided_TF_genes.txt
ecdaa851b286ef5c57d39631fabf5bcb *unitTests/pwIntOmics_exported.R
fe0a87544ccf51eb8843918e086046c7 *unitTests/pwIntOmics_internal.R
