genGenelistssub {pwOmics} | R Documentation

## Generate internally genelists from pathway databases.

### Description

This function generates genelists for a particular pathway database for further processing in detPathways function.

### Usage

    genGenelistssub(intIDs, database_int, PWDB_name)

### Arguments

`intIDs` | list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA.
`database_int` | integer indicating database entry in indIDs (output of genintIDs); biocarta = 1, kegg = 2, nci = 4, reactome = 4.
`PWDB_name` | character; pathway database name.

### Value

data.table of genelist of particular pathway database.

[Package pwOmics version 1.20.0 Index]