genGenelists {pwOmics} | R Documentation

## Generate genelists from pathway databases.

### Description

This function generates genelists from the chosen pathway databases for further processing in detPathways function.

### Usage

    genGenelists(intIDs, pwdatabases)

### Arguments

`intIDs` | list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA.
`pwdatabases` | vector indicating with which pathway database the pathways should be determined; possible choices are "biocarta", "kegg", "nci", "reactome".

### Value

list of genelists of specified pathway databases.

[Package pwOmics version 1.20.0 Index]