diagramSplicingEvent {psichomics} | R Documentation

## Prepare SVG diagram of alternative splicing events

### Description

Prepare SVG diagram of alternative splicing events

### Usage

    diagramSplicingEvent(
      parsed,
      type,
      class = "pull-right",
      style = NULL,
      showText = TRUE,
      showPath = TRUE,
      showAlternative1 = TRUE,
      showAlternative2 = TRUE,
      constitutiveWidth = 60,
      alternativeWidth = NULL,
      intronWidth = 15,
      constitutiveFill = "lightgray",
      constitutiveStroke = "darkgray",
      alternative1Fill = "#ffb153",
      alternative1Stroke = "#faa000",
      alternative2Fill = "#caa06c",
      alternative2Stroke = "#9d7039"
    )

### Arguments

`parsed` | Alternative splicing event
`type` | Character: alternative splicing event type
`class` | Character: class of SVG parent tag
`style` | Character: style of SVG parent tag
`showText` | Boolean: display coordinates and length (if available)
`showPath` | Boolean: display alternative splicing junctions
`showAlternative1` | Boolean: show alternative exon 1 and respective splicing junctions and text?
`showAlternative2` | Boolean: show alternative exon 2 and respective splicing junctions and text? (only related with mutually exclusive exons)
`constitutiveWidth` | Numeric: width of constitutive exon(s)
`alternativeWidth` | Numeric: width of alternative exon(s)
`intronWidth` | Numeric: width of intron's representation
`constitutiveFill` | Character: fill colour of constitutive exons
`constitutiveStroke` | Character: stroke colour of constitutive exons
`alternative1Fill` | Character: fill colour of alternative exon 1
`alternative1Stroke` | Character: stroke colour of alternative exon 1
`alternative2Fill` | Character: fill colour of alternative exon 2
`alternative2Stroke` | Character: stroke colour of alternative exon 2

### Value

Diagrams per alternative splicing event in SVG

[Package psichomics version 1.14.1 Index]