clusterPlotR {projectR} | R Documentation

## Generic clusterPlotR function

### Description

plotting function for clustering objects

### Usage

    clusterPlotR(cData, cls, x, NC, ...)

    ## S4 method for signature 'ANY,kmeans'
    clusterPlotR(
      cData = NA,
      cls = NA,
      x = NA,
      NC = NA,
      annoIndx = NA,
      label = NULL,
      ...
    )

    ## S4 method for signature 'ANY,hclust'
    clusterPlotR(
      cData = NA,
      cls = NA,
      x = NA,
      NC = NA,
      annoIndx = NA,
      label = NULL,
      ...
    )

### Arguments

`cData` | data used to get clusters
`cls` | a cluster (kmeans or hclust) object
`x` | a vector of length equal to number of samples to use for plotting
`NC` | vector of integers indicating which clusters to use
`...` | additional parameters for plotting. ex. pch,cex,col,labels, xlab, etc.
`annoIndx` | vector indexing into subsets for plotting
`label` | character vector to use for plotting text, defaults is NULL

### Value

A plot of the mean behavior for each cluster

### Examples

    ## Not run:
     k.RNAseq6l3c3t<-kmeans(p.RNAseq6l3c3t,22)
     clusterPlotR(p.RNAseq6l3c3t, cls=k.RNAseq6l3c3t,NC=1,x=pd.RNAseq6l3c3t$days,
    col=pd.RNAseq6l3c3t$color)

    ## End(Not run)

[Package projectR version 1.4.0 Index]