get_sample {phyloseq} | R Documentation

## Returns all abundance values for species `i`.

### Description

This is a simple accessor function for investigating a single species-of-interest.

### Usage

    get_sample(physeq, i)

    ## S4 method for signature 'otu_table'
    get_sample(physeq, i)

    ## S4 method for signature 'phyloseq'
    get_sample(physeq, i)

### Arguments

`physeq` | (Required). `otu_table-class`, or `phyloseq-class`.
`i` | (Required). A single taxa/species/OTU ID for which you want to know the abundance in each sample.

### Value

An integer vector of the abundance values for each sample in `physeq` for species `i`

### See Also

`get_taxa` `taxa_names` `sample_names`

### Examples

    data(esophagus)
    taxa_names(esophagus)
    get_sample(esophagus, "59_5_19")

[Package phyloseq version 1.32.0 Index]