phy_tree<- {phyloseq} | R Documentation

## Assign a (new) phylogenetic tree to `x`

### Description

Assign a (new) phylogenetic tree to `x`

### Usage

    phy_tree(x) <- value

    ## S4 replacement method for signature 'phyloseq,phylo'
    phy_tree(x) <- value

    ## S4 replacement method for signature 'phyloseq,phyloseq'
    phy_tree(x) <- value

### Arguments

`x` | (Required). `phyloseq-class`
`value` | (Required). `phylo-class`, or `phyloseq-class`

### Examples

    #
    data("esophagus")
    # An example of pruning to just the first 20 taxa in esophagus
    ex2a <- prune_taxa(taxa_names(esophagus)[1:20], esophagus)
    # The following 3 lines produces an ex2b that is equal to ex2a
    ex2b <- ex2a
    phy_tree(ex2b) <- phy_tree(esophagus)
    identical(ex2a, ex2b)

[Package phyloseq version 1.32.0 Index]