plotSummaryHistograms {phemd} | R Documentation

## Plots cell subtype frequency histograms summarizing each group of samples

### Description

Visualizes plots of relative frequency ("weights") of cell subtypes ("bins" or "signatures") summarizing each group of single-cell samples. Each summary histogram is computed by taking the bin-wise mean of all samples in the group

### Usage

    plotSummaryHistograms(myobj, cluster_assignments,
      cell_model = c("monocle2", "seurat", "phate"), cmap = NULL,
      ncol.plot = 4, ax.lab.sz = 2.5, title.sz = 3)

### Arguments

`myobj` | Phemd object containing cell subtype relative frequency in @data_cluster_weights slot
`cluster_assignments` | Vector containing group assignments for each sample in myobj
`cell_model` | Method by which cell state was modeled (either "monocle2", "seurat", or "phate")
`cmap` | Vector containing colors by which histogram bars should be colored (optional)
`ncol.plot` | Number of columns to use to plot multi-panel histogram plot
`ax.lab.sz` | Scaling factor for axis labels (default 2.5)
`title.sz` | Scaling factor for plot title (default 3)

### Details

`groupSamples` must be called before calling this function. Saves plots in directory called "summary_inhibs"

### Value

None

[Package phemd version 1.4.0 Index]