toSif {paxtoolsr} | R Documentation

## Convert a BioPAX OWL file to SIF

### Description

Convert a BioPAX OWL file to a binary SIF file

### Usage

    toSif(inputFile, outputFile = NULL)

### Arguments

`inputFile` | a string of the name of the input BioPAX OWL file
`outputFile` | a string of the name of the output SIF file (Optional)

### Details

Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/

### Value

see readSif()

### Examples

    outFile <- tempfile()
    results <- toSif(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
      package="paxtoolsr"),
      outFile)

[Package paxtoolsr version 1.22.0 Index]