plot,gatingTemplate,missing-method {openCyto} | R Documentation

## plot the gating scheme

### Description

plot the gating scheme using Rgraphviz

### Usage

    ## S4 method for signature 'gatingTemplate,missing'
    plot(x, y, ...)

### Arguments

`x` | `gatingTemplate` object
`y` | either `character` specifying the root node which can be used to visualize only the subgraph or `missing` which display the entire gating scheme
`...` | other arguments graphAttr, nodeAttr: graph rendering attributes passed to renderGraph showRef `logical`: whether to display the reference gates. Sometime it maybe helpful to hide all those reference gates which are not the cell population of interest and used primarily for generating other population nodes.

### Examples

    ## Not run:
    gt <- gatingTemplate(system.file("extdata/gating_template/tcell.csv",package = "openCyto"))
    plot(gt) #plot entire tree
    plot(gt, "lymph") #only plot the subtree rooted from "lymph"

    ## End(Not run)

[Package openCyto version 2.0.0 Index]