getProbeInfo {oligo} | R Documentation

## Probe information selector.

### Description

A tool to simplify the selection of probe information, so user does not need to use the SQL approaches.

### Usage

    getProbeInfo(object, field, probeType = "pm", target = "core", sortBy = c("fid", "man_fsetid", "none"), ...)

### Arguments

`object` | `FeatureSet` object.
`field` | character string with names of field(s) of interest to be obtained from database.
`probeType` | character string: 'pm' or 'mm'
`target` | Used only for Exon or Gene ST arrays: 'core', 'full', 'extended', 'probeset'.
`sortBy` | Field to be used for sorting.
`...` | Arguments to be passed to `subset`

### Value

A `data.frame` with the probe level information.

### Note

The code allows for querying info on MM probes, however it has been used mostly on PM probes.

### Author(s)

Benilton Carvalho

### Examples

    if (require(oligoData)){
       data(affyGeneFS)
       availProbeInfo(affyGeneFS)
       probeInfo <- getProbeInfo(affyGeneFS, c('fid', 'x', 'y', 'chrom'))
       head(probeInfo)
       ## Selecting antigenomic background probes
       agenGene <- getProbeInfo(affyGeneFS, field=c('fid', 'fsetid', 'type'), target='probeset', subset= type == 'control->bgp->antigenomic')
       head(agenGene)
    }

[Package oligo version 1.52.1 Index]