checkOrder {oligoClasses} | R Documentation

## Checks whether a eSet-derived class is ordered by chromosome and physical position

### Description

Checks whether a `eSet`-derived class (e.g., a `SnpSet` or `CNSet` object) is ordered by chromosome and physical position

### Usage

    checkOrder(object, verbose = FALSE)
    chromosomePositionOrder(object, ...)

### Arguments

`object` | A `SnpSet` or `CopyNumberSet`.
`verbose` | Logical.
`...` | additional arguments to `order`

### Details

Checks whether the object is ordered by chromosome and physical position.

### Value

Logical

### Author(s)

R. Scharpf

### See Also

`order`

### Examples

    data(oligoSetExample)
    if(!checkOrder(oligoSet)){
       oligoSet <- chromosomePositionOrder(oligoSet)
    }
    checkOrder(oligoSet)

[Package oligoClasses version 1.50.4 Index]