1b89dc0a13650bc89dea888c670b8d44 *CITATION
07799f8e46b5478c3020f813a2ff1742 *DESCRIPTION
69d659a5a02b82481e1e9c46c3439cad *INDEX
b5b6bed06dd8ed68f00c26d0b4cede89 *LICENSE
731a11563fa10598abbc4d2b2a702b95 *Meta/Rd.rds
acb9983cac1feacbc240d953445d017d *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
aedad6a6fd6a1f713320edd3354a7fa8 *Meta/hsearch.rds
e567f93046c9b5eaa9b62dbf2f69fdaa *Meta/links.rds
7fa9b3b90ef9880e6115e0f0378dcc24 *Meta/nsInfo.rds
35ca5645b96e9247db44ae48f978b345 *Meta/package.rds
19cc83ce0ab10ceea8c914a1e63a8844 *Meta/vignette.rds
a27c90a581cfa389847cd8067e78099c *NAMESPACE
13325c204f8fce5465983d423fe12dcf *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ngsReports
7fe0fd2b3f41db404403a9fe9737bc20 *R/ngsReports.rdb
06a82c3d95ad38194697d0f8dbdfd086 *R/ngsReports.rdx
8d5e996e2433907340eff1eef3b9a703 *data/Rdata.rdb
9f13bcf00683f668e7ae632b9fe3e053 *data/Rdata.rds
595cf6a30d4fee2b9a7872c73a0eab44 *data/Rdata.rdx
ce9ae01268269ec7ecaac44004cbb4b2 *doc/index.html
558789ec660791c2a837c64c6678b30f *doc/ngsReportsIntroduction.R
4b0a1dbcd011ae094174702d797518ab *doc/ngsReportsIntroduction.Rmd
79f6c2fd3a055627d1dec5fe8171cce9 *doc/ngsReportsIntroduction.html
7ea003cf0687f2973dd4ee09c2a7c83f *extdata/ATTG_R1_fastqc.zip
0a98f0d9503ccfd8cfb93d3cc95d5977 *extdata/ATTG_R2_fastqc.zip
0d85c5c772697bc5a7c288ffee3e2256 *extdata/Athaliana.TAIR10.tRNA.fasta
e80781206ef3633a57b4094203248d24 *extdata/CCGC_R1_fastqc.zip
9a7e40c7eb9a29fd04534480540411a4 *extdata/CCGC_R2_fastqc.zip
fdfa66f1b02cdc1958cc3f7f69a3eb8c *extdata/GACC_R1_fastqc.zip
174693f49bbf4b285c8a9d40970a37b3 *extdata/GACC_R2_fastqc.zip
90c8bbc76e20644b04476c222cf6e5e6 *extdata/Sample1.trimmomaticPE.txt
d45c0cca6db37d90d5160202e7ef86b6 *extdata/Sample1_Dedup_metrics.txt
2fc2db169e0ca415930c37197bd91364 *extdata/Sample2.trimmomaticSE.txt
1024c49c68e186f359e2d7ae718841c4 *extdata/adapterRemoval.settings
e2ae5378499594a79dfdb6e20386d800 *extdata/bowtie2PE.txt
10a62d19e6b8488a99d6c2cc74515142 *extdata/bowtie2SE.txt
90af8f8b1f5fda1519e75adc1cb2a8a5 *extdata/bowtiePE.txt
2bc4af3feae70827eb80dfea14dd0f21 *extdata/bowtieSE.txt
2c1c5adc01b24fb26a070fd78f51874b *extdata/cutadapt_full.txt
cabc9e13e8c30a1a834393ce5eb9541d *extdata/cutadapt_minimal.txt
09f810e543f2476422738651ba81b64a *extdata/errorTestingFiles/completelyEmpty.zip
6c2b775634a0007960d6383bb42ccce0 *extdata/errorTestingFiles/hello.txt.gz
ffcb4751ad11d80c72f622a4e360db41 *extdata/errorTestingFiles/moduleNamesNoData.zip
cb5fb1d6823d9c7f51e85fbe093ad21e *extdata/exampleRNASeq_R1_fastqc/fastqc_data.txt
8af993874204a8c34642cca06dc36ffd *extdata/exampleRNASeq_R1_fastqc/summary.txt
532495997f2eadb63acb67fad6fc78c6 *extdata/exampleRNASeq_R2_fastqc/fastqc_data.txt
605a6599c93a4dd77fa61720c4e51018 *extdata/exampleRNASeq_R2_fastqc/summary.txt
bafdc4a537a6ec54927e833a0815a6c2 *extdata/featureCounts.summary
194faf6ce8fbcb18212c33b293bfe808 *extdata/flagstat.txt
268e7f16693e1e3bf51669b5ce301fce *extdata/hisat2PE.txt
dcdab034b0c7261d3104253754d2249b *extdata/log.final.out
a62592b4ed230d2c905d44fcc713efe3 *extdata/ngsReports_Fastqc.Rmd
1f25944e669616b540280f6137a6aaea *extdata/quast1.tsv
0a0606a39314f417e7f5d0b6c7c6911d *extdata/quast2.tsv
eb984742888a6756c8cc682e6464b861 *extdata/short_summary_Dmelanogaster_Busco.txt
80776602feff7d2d56124759cf89ed6e *help/AnIndex
983fcd82e5db4c2579273761d4e2a7ff *help/aliases.rds
93a0f1e8bf36b16eac189e352f4b2b1b *help/ngsReports.rdb
7a4ba41a7321f296ee805467bbb66fc1 *help/ngsReports.rdx
2f64c3a3b0d5a03f929a6281d9e88776 *help/paths.rds
db1c7d0435f13d8313763da23672994d *html/00Index.html
2c7070daf4dc826cd13a5abed3efe6b6 *html/FastqcData.html
24af5086596f9d70ed2b3dbf0caebb44 *html/FastqcDataList.html
b4ea771fcdbce619a618a3e6bfd2ddfc *html/PwfCols-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
157f979fb4af68c3a429da75d7cf6611 *html/TheoreticalGC-class.html
ac1d9384bcd9b6c014c483bfbbe68321 *html/dot-FastqcFile-class.html
95ec23ae96b17d2451f0f1289904f2e0 *html/dot-addPercent.html
7d0bc1d877f8994fbed3658164fb1be8 *html/dot-emptyPlot.html
8a1d5cda32c242e98fdab2b75f3fa589 *html/dot-getToolName.html
12c66dbd4ec6636b686c62fedf475fdc *html/dot-hidePWFRects.html
82dd83ef117ca7497cc35c94ded4b820 *html/dot-isValidAdapterRemovalLog.html
f0622e0a94988d9cf8c4adba0efc226f *html/dot-isValidBowtieLog.html
24079a7c07a44a3e26e1a8c72fcc3543 *html/dot-isValidBuscoLog.html
7047e314a8e967b1b4eca808e76bf0ad *html/dot-isValidCutadaptLog.html
ad4c3548563b8bac75d2d14ad01cec95 *html/dot-isValidDuplicationMetricsLog.html
b3d35986bde7136a4762aaea909d53ce *html/dot-isValidFeatureCountsLog.html
3c4974975c3e4569a8dbb234fc0288e2 *html/dot-isValidFlagstatLog.html
e93a6408c9cde68f20720fc2955e14b0 *html/dot-isValidHisat2Log.html
eae759607eb0d4da770da25322f4d67b *html/dot-isValidQuastLog.html
e0a1c8e163860bbea3a95b5491e16192 *html/dot-isValidStarLog.html
71db23951f7e1c47d5a8ec33a6cdd549 *html/dot-isValidTrimmomaticLog.html
4bcdf4d927061ca55c02236b12ba5151 *html/dot-makeDendro.html
ae013fd73e88af27429727882dc04a6a *html/dot-makeLabels.html
94e0225ffc574d4e9b7d3e55ac83b0fc *html/dot-makeSidebar.html
6461452c18bd9d3e0e308051b37c21c6 *html/dot-parseAdapterRemovalLogs.html
a4a29582424618721d581798d3d8fce9 *html/dot-parseBowtieLogs.html
b4aa95750e0c4c4827de94d37f8b2e62 *html/dot-parseBuscoLogs.html
9b356ee67922f3fea28f943c29044f4d *html/dot-parseCutadaptLogs.html
3846f1e3b68a8ba4614f497ee0857de8 *html/dot-parseDuplicationMetricsLogs.html
ef8f46be55b7c81988b1f20ad28fac6d *html/dot-parseFeatureCountsLogs.html
4ae9031b351f1b55fd5edcc112e66e8d *html/dot-parseFlagstatLogs.html
19f84dfcddad1ef9ff8a5a797b437714 *html/dot-parseHisat2Logs.html
5e2b9246dd11f9de3a9bc3584dabba75 *html/dot-parseQuastLogs.html
344ebfac4b54fca2420b8f3665bc8b65 *html/dot-parseStarLogs.html
47186c13355a71914a787ead5b7e5dbc *html/dot-parseTrimmomaticLogs.html
0b51dfa71b0aa6629d851aab8487655c *html/dot-renderDendro.html
791a3662028db0ef328acdf16d3277d1 *html/dot-scale_fill_pwf.html
fd81d38c4054d562baf03d43297e7f34 *html/dot-splitByTab.html
b73883de3e401d60dcae3bb2f775a269 *html/estGcDistn.html
3bf34593dcef69f72dc6bc289899016c *html/extract-methods.html
f7309d03838da6a149e943aa17e2e067 *html/fqName-methods.html
0291ae486dd928b621ea3284956e25d6 *html/fqcVersion.html
4425b296cd088b5df7d330edba7be360 *html/gcAvail.html
96410e30a83ae11a61bbd35448e9fc46 *html/gcTheoretical.html
c8a02be34401919b43bfba9d5798700b *html/getColours-methods.html
2beacc2c1aee3690745c01c3bcb89246 *html/getGC.html
ff31a09670dc8d9b261db769f30af3cd *html/getModule.html
999e1e5e4889c29e890fcc6b7749c60e *html/getSummary.html
4e732405d7c7b10d82a0fb360d2d5844 *html/importNgsLogs.html
2130ae59e7a0a7c856067d4a0ffe1908 *html/isCompressed.html
e609e64c998c157a1ba3e3a72a3e7a79 *html/mData.html
bb0c4d1d7c4e5b22cf5ef67579d59cf6 *html/maxAdapterContent.html
2541adf2e2da30e25b85d991c383852b *html/overRep2Fasta-methods.html
2ff7f90b441fe39b52f5149108ddcca5 *html/path.html
790ced8f6f20e9564d2f461297da8af4 *html/plotAdapterContent-methods.html
710b347f22f51b33ee464327a2797ca7 *html/plotAlignmentSummary.html
0758a649b4890eb02ba1bdf0f2d7a43f *html/plotAssemblyStats.html
55c7cd5fd9de80ee83e18ad4a8d19c60 *html/plotBaseQuals-methods.html
00f28096b0988b8b5a7b5ae72a69457e *html/plotDupLevels-methods.html
0a2337adb2e7b0316826788a8edf4e31 *html/plotFastqcPCA-methods.html
73f4446a0e92c837f4007c2cc3013118 *html/plotGcContent-methods.html
e4e07616b557bd8da8011867044af9cd *html/plotKmers-methods.html
fdeec87c868729c7ebf1aa6a8d1b3f47 *html/plotNContent-methods.html
2d4906e3b091208215c683e394d2eb75 *html/plotOverrep-methods.html
d4abbed8bf8a1959a5249b7eeb53b754 *html/plotReadTotals-methods.html
31e601ee8166a277222dd53d2f8f99b2 *html/plotSeqContent-methods.html
67d094c83bcb0e4764022db564b52809 *html/plotSeqLengthDistn-methods.html
da86dd3226a12ea0d1b0b772cc092f8a *html/plotSeqQuals-methods.html
d44ed9f9919077bfbb4522ecc3148750 *html/plotSummary-methods.html
4b41d3ab196e281b221a5b9811cf4959 *html/pwf.html
57bf5d08436f8b98602816fdf71654ac *html/readTotals.html
073ff3d31777ab8f8729f74280df1257 *html/runFastQC-methods.html
0175a4e0f3bf2e5c5734ed43f7ab2066 *html/writeHtmlReport.html
