compileFeatureScores {netDx} | R Documentation

## Tally the score of networks through cross-validation

### Description

Tally the score of networks through cross-validation

### Usage

    compileFeatureScores(fList, filter_WtSum = 100, verbose = FALSE)

### Arguments

`fList` | (char) Vector of paths to GeneMANIA NRANK files
`filter_WtSum` | (numeric between 5-100) Limit to top-ranked networks such that cumulative weight is less than this parameter. e.g. If filter_WtSum=20, first order networks by decreasing weight; then keep those whose cumulative weight <= 20.
`verbose` | (logical) print messages

### Value

(data.frame) Feature name and score; includes features that occur at least once in `fList`.

### Examples

    netDir <- system.file("extdata","GM_NRANK",package="netDx")
    netFiles <- sprintf('%s/%s', netDir,dir(netDir,pattern='NRANK$'))
    pTally <- compileFeatureScores(netFiles,verbose=TRUE)
    print(head(pTally))

[Package netDx version 1.0.3 Index]