Package: muscat
Title: Multi-sample multi-group scRNA-seq data analysis tools
Description: `muscat` provides various methods and visualization tools 
    for DS analysis in multi-sample, multi-group, multi-(cell-)subpopulation 
    scRNA-seq data, including cell-level mixed models and methods based on 
    aggregated “pseudobulk” data, as well as a flexible simulation platform 
    that mimics both single and multi-sample scRNA-seq data.
Type: Package
Version: 1.2.1
Depends: R (>= 4.0)
Authors@R: c(
	person("Helena L.", "Crowell", role=c("aut", "cre"), 
	    email="helena.crowell@uzh.ch"),
	person("Pierre-Luc", "Germain", role="aut"),
	person("Charlotte", "Soneson", role="aut"),
	person("Anthony", "Sonrel", role="aut"),
	person("Mark D.", "Robinson", role=c("aut", "fnd"), 
	    email="mark.robinson@imls.uzh.ch"))
Imports: BiocParallel, blme, ComplexHeatmap, data.table, DESeq2, dplyr,
        edgeR, ggplot2, glmmTMB, grDevices, grid, limma, lmerTest,
        lme4, Matrix, matrixStats, methods, progress, purrr, S4Vectors,
        scales, scater, sctransform, stats, SingleCellExperiment,
        SummarizedExperiment, variancePartition, viridis
Suggests: BiocStyle, countsimQC, cowplot, ExperimentHub, iCOBRA, knitr,
        phylogram, RColorBrewer, reshape2, rmarkdown, testthat, UpSetR
biocViews: ImmunoOncology, DifferentialExpression, Sequencing,
        SingleCell, Software, StatisticalMethod, Visualization
License: GPL (>= 2)
VignetteBuilder: knitr
RoxygenNote: 7.1.0
Encoding: UTF-8
LazyData: TRUE
URL: https://github.com/HelenaLC/muscat
BugReports: https://github.com/HelenaLC/muscat/issues
git_url: https://git.bioconductor.org/packages/muscat
git_branch: RELEASE_3_11
git_last_commit: c4e1736
git_last_commit_date: 2020-06-10
Date/Publication: 2020-06-10
NeedsCompilation: no
Packaged: 2020-06-11 06:52:12 UTC; biocbuild
Author: Helena L. Crowell [aut, cre],
  Pierre-Luc Germain [aut],
  Charlotte Soneson [aut],
  Anthony Sonrel [aut],
  Mark D. Robinson [aut, fnd]
Maintainer: Helena L. Crowell <helena.crowell@uzh.ch>
Built: R 4.0.0; ; 2020-06-11 18:00:59 UTC; windows
