useDynLib(mosaics)

exportPattern("^[[:alpha:]]+")

importFrom("grDevices", "dev.off", "pdf")

importFrom("stats", "coef", "density", "dnbinom", "loess.smooth",
           "rnbinom")

importFrom("utils", "read.table", "write.table")

import( methods, graphics, Rcpp, MASS, splines, lattice )

import( IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors )

export( constructBins, readBins, mosaicsFit, mosaicsPeak, mosaicsRunAll, generateWig )

export( mosaicsFitHMM, mosaicsPeakHMM )

export( extractReads, findSummit, adjustBoundary, filterPeak )

export( show, print, plot )

export( estimates )

export( export )

export( bdBin, empFDR, readCoverage, read, seqDepth, postProb )

export( chrID, coord, tagCount, input, mappability, gcContent )
