Package: metavizr
Type: Package
Version: 1.12.0
Authors@R: c( person("Hector", "Corrada Bravo",
        email="hcorrada@gmail.com", role=c("cre","aut")),
        person("Florin", "Chelaru", email="florin.chelaru@gmail.com",
        role=c("aut")), person("Justin", "Wagner",
        email="jwagner@cs.umd.edu", role=c("aut")), person("Jayaram",
        "Kancherla", email="jayaram.kancherla@gmail.com",
        role=c("aut")), person("Joseph", "Paulson",
        email="jpaulson@jimmy.harvard.edu", role=c("aut")))
Maintainer: Hector Corrada Bravo <hcorrada@gmail.com>
License: MIT + file LICENSE
Title: R Interface to the metaviz web app for interactive metagenomics
        data analysis and visualization
Description: This package provides Websocket communication to the
        metaviz web app (http://metaviz.cbcb.umd.edu) for interactive
        visualization of metagenomics data. Objects in R/bioc
        interactive sessions can be displayed in plots and data can be
        explored using a facetzoom visualization. Fundamental
        Bioconductor data structures are supported (e.g., MRexperiment
        objects), while providing an easy mechanism to support other
        data structures. Visualizations (using d3.js) can be easily
        added to the web app as well.
VignetteBuilder: knitr
Depends: R (>= 3.4), metagenomeSeq (>= 1.17.1), methods, data.table,
        Biobase, digest
Imports: epivizr, epivizrData, epivizrServer, epivizrStandalone, vegan,
        GenomeInfoDb, phyloseq, httr
Suggests: knitr, BiocStyle, matrixStats, msd16s (>= 0.109.1), etec16s,
        testthat, gss, curatedMetagenomicData
Collate: 'metavizControl.R' 'startMetaviz.R' 'utils.R'
        'EpivizMetagenomicsData-class.R' 'register-methods.R'
        'validateMRExperiment.R' 'MetavizApp-class.R'
        'MetavizGraph-class.R'
        'EpivizMetagenomicsDataInnerNodes-class.R'
        'MetavizGraphInnerNodes-class.R'
        'EpivizMetagenomicsDataTimeSeries-class.R'
biocViews: Visualization, Infrastructure, GUI, Metagenomics,
        ImmunoOncology
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/metavizr
git_branch: RELEASE_3_11
git_last_commit: 626d3bf
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 05:29:35 UTC; biocbuild
Author: Hector Corrada Bravo [cre, aut],
  Florin Chelaru [aut],
  Justin Wagner [aut],
  Jayaram Kancherla [aut],
  Joseph Paulson [aut]
Built: R 4.0.0; ; 2020-04-28 17:44:42 UTC; windows
