make.matrix {metaseqR} | R Documentation

## Results output build helper

### Description

Returns a list of matrices based on the export scales that have been chosen from the main function and a subset of samples based on the sample names provided in the `sample.list` argument of the main `metaseqr` function. Internal use.

### Usage

        make.matrix(samples, data.list, export.scale = "natural")

### Arguments

`samples` | a set of samples from the dataset under processing. They should match sample names from `sample.list`. See also the main help page of `metaseqr`.
`data.list` | a list containing natural or transformed data, typically an output from `make.transformation`.
`export.scale` | the output transformations used as input also to `make.transformation`.

### Value

A named list whose names are the elements in `export.scale`. Each list member is the respective sample subest data matrix.

### Author(s)

Panagiotis Moulos

### Examples

    data.matrix <- round(1000*matrix(runif(400),100,4))
    rownames(data.matrix) <- paste("gene_",1:100,sep="")
    colnames(data.matrix) <- c("C1","C2","T1","T2")
    tr <- make.transformation(data.matrix,c("log2","vst"))
    mm <- make.matrix(c("C1","T1"),tr,"log2")
    head(tr$vst)

[Package metaseqR version 1.28.0 Index]