check.num.args {metaseqR} | R Documentation

## Numeric argument validator

### Description

Checks if one or more given numeric argument(s) satisfy several rules concerning numeric arguments, e.g. proper bounds or proper format (e.g. it must be a number and not a character). Mostly for internal use.

### Usage

        check.num.args(arg.name, arg.value, arg.type, arg.bounds,
            direction)

### Arguments

`arg.name` | the name of the argument that is checked (for display purposes).
`arg.value` | the value(s) of the argument to be checked.
`arg.type` | either the string `"numeric"` to denote generic double-like R numerics or `"integer"` for integer values.
`arg.bounds` | a numeric or a vector with 2 elements, restraining `arg.value` to be within the bounds defined by the input vector or e.g. larger (smaller) than the numeric value. See examples.
`direction` | a string denoting to which direction the `arg.value` should be compared with `arg.bounds`. For example, `"both"` should be given with a two element vector against which, `arg.value` will be checked to see whether it is smaller than the low boundary or larger than the higher boundary. In that case, the function will throw an error. The direction parameter can be one of: `"both"` (described above), `"botheq"` (as above, but the `arg.val` is also checked for equality -closed intervals), `"gt"` or `"gte"` (check whether `arg.val` is smaller or smaller than or equal to the first value of `arg.bounds`), `"lt"` or `"lte"` (check whether `arg.val` is larger or larger than or equal to the first value of `arg.bounds`).

### Author(s)

Panagiotis Moulos

### Examples

    pcut <- 1.2 # A probability cannot be larger than 1! It will throw an error!
    #check.num.args("pcut",pcut,"numeric",c(0,1),"botheq")
    pcut <- 0.05 # Pass
    check.num.args("pcut",pcut,"numeric",c(0,1),"botheq")
    gc.col <- 3.4 # A column in a file cannot be real! It will throw an error!
    #check.num.args("gc.col",gc.col,"integer",0,"gt")
    gc.col <- 5L # Pass
    check.num.args("gc.col",gc.col,"integer",0,"gt")

[Package metaseqR version 1.28.0 Index]