parse_scones_settings {martini} | R Documentation

## Parse `scones.cv` settings.

### Description

Creates a list composed by all `scones.cv` settings, with the values provided by the user, or the default ones if none is provided.

### Usage

    parse_scones_settings(
      score = "chi2",
      criterion = "consistency",
      etas = numeric(),
      lambdas = numeric(),
      c = numeric()
    )

### Arguments

`score` | Association score to measure association between genotype and phenotype. Possible values: chi2 (default), glm.
`criterion` | String with the function to measure the quality of a split. Possible values: consistency (default), bic, aic, aicc.
`etas` | Numeric vector with the etas to explore in the grid search. If ommited, it's automatically created based on the association scores.
`lambdas` | Numeric vector with the lambdas to explore in the grid search. If ommited, it's automatically created based on the association scores.
`c` | Numeric vector with the association scores of the SNPs. Specify it to automatically an appropriate range of etas and lambas.

### Value

A list of `evo` settings.

### Examples

    martini:::parse_scones_settings(etas = c(1,2,3), lambdas = c(4,5,6))
    martini:::parse_scones_settings(c = c(1,10,100), score = "glm")

[Package martini version 1.8.0 Index]