colorBiasSummary {lumi} | R Documentation

## A summary of colorBias information

### Description

A summary of colorBias information, which is a data.frame summarizing the intensities of individual samples

### Usage

    colorBiasSummary(methyLumiM, logMode = TRUE, channel = c("both", "unmethy", "methy", "sum"))

### Arguments

`methyLumiM` | MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities
`logMode` | Whether plot the intensities in log-scale
`channel` | estimate the intensity in different methods

### Details

A summary of colorBias information. There are four options using "channel" parameter to plot the density plot. "both": estimate the density by pooling together methylated and unmethylated probe intensities. "unmethy" and "methy": plot either unmethylated or methylated probe density. "sum" plot the density of the sum of methylatled and unmethylated probe intensitys.

### Value

A data.frame summarizing the intensities of individual samples

### Author(s)

Pan DU

[Package lumi version 2.40.0 Index]