isoPLSDAplot {isomiRs} | R Documentation

## Plot components from isoPLSDA analysis (pairs plot)

### Description

Plot the most significant components that come from `isoPLSDA()` analysis together with the density of the samples scores along those components.

### Usage

    isoPLSDAplot(pls, n = 2)

### Arguments

`pls` | Output from `isoPLSDA()` function.
`n` | Number of components to plot.

### Details

The function `isoPLSDAplot` helps to visualize the results from `isoPLSDA()`. It will plot the samples using the significant components (t1, t2, t3 ...) from the PLS-DA analysis and the samples score distribution along the components. It uses `GGally::ggpairs()` for the plot.

### Value

`GGally::ggpairs()` plot showing the scores for each sample using isomiRs/miRNAs expression to explain variation.

base::data.frame object with a first column refering to the sample group, and the following columns refering to the score that each sample has for each component from the PLS-DA analysis.

### Examples

    data(mirData)
    # Only miRNAs with > 10 reads in all samples.
    ids <- isoCounts(mirData, minc=10, mins=6)
    ids <- isoNorm(ids, formula=~condition)
    pls.ids <- isoPLSDA(ids, "condition", nperm = 2)
    isoPLSDAplot(pls.ids)

[Package isomiRs version 1.16.2 Index]