mirna2targetscan {isomiRs} | R Documentation

## Find targets in targetscan database

### Description

From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.

### Usage

    mirna2targetscan(mirna, species = "hsa", org = NULL, keytype = NULL)

### Arguments

`mirna` | Character vector with miRNA names as in miRBase 21.
`species` | hsa or mmu supported right now.
`org` | `AnnotationDb` obejct. For example:(org.Mm.eg.db)
`keytype` | Character mentioning the gene id to use. For example, `ENSEMBL`.

### Value

data.frame with 4 columns:

- miRFamily

- Seedmatch

- PCT

- entrezGene

### Examples

    library(targetscan.Hs.eg.db)
    mirna2targetscan(c("hsa-miR-34c-5p"))

[Package isomiRs version 1.16.2 Index]