46b5ced3517b929ab2fe4cae253054ed *CITATION
5ca7d9d22753a1fa9a3a26cd11e6f940 *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
99069e8da4d4365b44e79fcec14bdfbf *Meta/Rd.rds
6a93732733d04d45f334d2b9654b9895 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
04e7925e57de3fb87eecf7637c911fb2 *Meta/hsearch.rds
dfa2088f2c032c5445aab69e8a889668 *Meta/links.rds
121ae856232d0bd95b4974ab2dbe9f22 *Meta/nsInfo.rds
cdb25248772d5f1434f8b67c5b73335d *Meta/package.rds
9377b9a5b2785a4f707ce6dbf5ef999e *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/isobar
fcf5b6aaea8e84e2a8a1a87b0382a946 *R/isobar.rdb
60d833a1247200e0d5ef6f7788dc5663 *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
79ebf01d2cdf76c0916333bb73c7cdc9 *doc/isobar-devel.pdf
9cdd609cdff0eb483b3c4be30ddc9df0 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
3cb17407bd2c4350812f4bf7f074ec00 *doc/isobar-ptm.pdf
8edfd6d1d02b284425d25dda029a92cc *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
12f11d43c87de82566c7063842f83b6f *doc/isobar-usecases.pdf
27e389d69560bc70be4f67850e716580 *doc/isobar.R
0286bb554d231774371cc1860a6f9e6a *doc/isobar.Rnw
29f0f9ba535b3ae99aceb5ed64bfe6e0 *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
4b112101e0d1db37dcf59dc3de20674a *help/aliases.rds
9b95f71ab7f5d564e81db1e284d7d7b3 *help/isobar.rdb
d070c0036dd95c92327b5a1f699cdcf8 *help/isobar.rdx
0e834aa1d413621eb0282270240525cf *help/paths.rds
08ad5eea332c945c136f122f2d71abb4 *html/00Index.html
1367938e14c36bd955df6f8d32e544eb *html/IBSpectra-class.html
b31870c68eefe061e814f1d223f3e251 *html/NoiseModel-class.html
93db185bb54e8d2c9a61bf03c934769f *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
25e7a9ea79dd476273729ca019195c12 *html/TlsParameter-class.html
6fd92909a893c35f0358cf7f4dc4be56 *html/Tlsd-class.html
d9cec1c7685fb59a3bc1fe755fb37a33 *html/calc.delta.score.html
86700ede6f286f4b9edf43cd526b0786 *html/calc.startpos.html
ae673aef86da504be87b34ae216a8806 *html/calculate-pvalues.html
730901abead1dcac30212d284e25538a *html/calculate.dNSAF.html
2d227fedfa3c18b65ed77e48b5f10e23 *html/calculate.emPAI.html
dba8a5e7dbbec8b92a744ca2494848d1 *html/correct.peptide.ratios.html
0247cf84d89e7af096f556bce709bea9 *html/distr-methods.html
dd53104e62981030c17d811087f50caf *html/fit-distr.html
bc550097315c0da8e4cf49d38df74bc4 *html/getPeptideModifContext.html
2d6d79f50764bac3482970cbd480e2ac *html/getPhosphoRSProbabilities.html
d2990a1c755b9da589e55c47a06e659a *html/getPtmInfo.html
992575cc674ecef590059af5ce353026 *html/groupMemberPeptides.html
1a79832e76885f125220c0dcd5877260 *html/human.protein.names.html
7d45642de0080d16a9fbeff2df808018 *html/isobar-analysis.html
574205613b77b31cb3e4567a2126e413 *html/isobar-data.html
ff14de93a84caa6d9ea5edafd3202982 *html/isobar-import.html
8d95694be5281827e44a6e52fb4b42f0 *html/isobar-log.html
ff1928fc79663445a67d19ae3c9ef4be *html/isobar-package.html
2131de166117acdd3565191cc0ab781d *html/isobar-plots.html
6cc23e20bccfa699c57c59e69386dea8 *html/isobar-preprocessing.html
7f416c2b11600cf0ca56b7aac717fa18 *html/isobar-reports.html
e21b91976b3657993a60f85fa3f8ae81 *html/maplot.protein.html
0b3e3ebdc82b8ef1609ee9ae7b651e37 *html/number.ranges.html
d3ba1956035f30a4738a4fc4afffc061 *html/observedKnownSites.html
16527d87bfd65850e0609d9e65174890 *html/peptide.count.html
8a5fa5e103d32fbf5ff0a4c84104cc36 *html/proteinInfo-methods.html
ec523edd87c0143c91ebb4fa6b35d7dc *html/proteinNameAndDescription.html
fc1eb8ab639441801acc34e78c302fca *html/ratio-summ.html
c5dd18151474185f8f5438abe8ee2619 *html/ratiosReshapeWide.html
7f3fb377a4650a346d27117baa6e0490 *html/reporter.protein-methods.html
2876c259ac586e9a0ed7b04d4bc9761f *html/sanitize.html
425b8ce402895206e9a12140a48da7cc *html/shared.ratios.html
ecd0ff7c7151fd729207d04996c5d604 *html/shared.ratios.sign.html
d59d70c758e4329785b57084bc2c6923 *html/specificities.html
e840c6f6c5aa59dc1ad6cfc091bd4f69 *html/spectra.count2.html
2ea9c0f1157588f001f3a0a085e3f297 *html/subsetIBSpectra.html
19a187528cbc4c6e63fcd38b44b2382e *html/utils.html
0a6e3a99db959b0caf9d8f491ca4e9f2 *html/writeHscoreData.html
99794dca933ac2f8bbb99914c4477f7f *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
