cell.removed {immunoClust} | R Documentation

## Brief Information of removed Cell-events by immunoClust Cell-event Clustering

### Description

Gives information about the amount of overexposed cell-event observetion in a FCS-file.

### Usage

    removed.above(fcs, parameters=NULL, N=NULL, max.count=10, max=NULL)
    removed.below(fcs, parameters=NULL, N=NULL, min.count=10, min=NULL)

### Arguments

`fcs` | An object of class flowFrame. Rows correspond to observations and columns correspond to measured parameters.
`parameters` | A character vector specifying the parameters (columns) to be included in clustering. When it is left unspecified, all the parameters will be used.
`N` | Maximum number of observations used for clustering. When unspecified or higher than the number of observations (i.e. rows) in dat, all observations are used for clustering, otherwise only the first `N` observations.
`max.count` | An integer specifying the threshold count for filtering data points from above. The default is 10, meaning that if 10 or more data points are larger than or equal to `max`, they will be excluded from the analysis. If `max` is `NULL`, then the maximum value of each parameter will be used. To suppress filtering, it is set to -1.
`max` | The upper limit set for data filtering. Note that it is a vector of length equal to the number of parameters (columns), implying that a different value can be set for each parameter.
`min.count` | analoguous to `max.count`.
`min` | analoguous to `min`.

### Value

A table with two rows containing the number of events above `max` in each parameter and above in only this parameter. The two last columns give the sum and percentage of all events above `max` in any parameter.

### Author(s)

Till Sörensen till-antoni.soerensen@charite.de

### Examples

    data(dat.fcs)
    removed.above(dat.fcs)

[Package immunoClust version 1.20.1 Index]