hic {idr2d} | R Documentation

## Example Hi-C data set

### Description

This object contains data from a Hi-C contact map of human chromosome 1 and a resolution of 2.5 * 10^6, extracted from GEO series GSE71831.

### Usage

    hic

### Format

A list with two components, the data frames `rep1_df` and `rep2_df`, which have the following four columns:

column 1: | `chr` | character; genomic location of block - chromosome (e.g., `"chr3"`)
column 2: | `region1` | integer; genomic location of block - coordinate A
column 3: | `region2` | integer; genomic location of block - coordinate B
column 4: | `value` | numeric; heuristic used to rank blocks, in this case: number of reads

[Package idr2d version 1.2.2 Index]