segs2Granges {genoset} | R Documentation

## GRanges from segment table

### Description

GenoSet contains a number of functions that work on segments. Many work on a data.frame of segments, like segTable and runCBS. This function converts one of these tables in a GRanges. The three columns specifying the ranges become the GRanges and all other columns go into the 'mcols' portion of the GRanges object.

### Usage

    segs2Granges(segs)

### Arguments

`segs` | data.frame with loc.start, loc.end, and chrom columns, like from segTable or runCBS

### Value

GRanges

### See Also

Other 'segmented data': `bounds2Rle`, `rangeSegMeanLength`, `runCBS`, `segPairTable`, `segTable`, `segs2RleDataFrame`, `segs2Rle`

[Package genoset version 1.44.0 Index]