agreement {funtooNorm} | R Documentation

## Function to measure intra-replicate agreement for methylation data.

### Description

Function to measure intra-replicate agreement for methylation data.

### Usage

    agreement(Beta, individualID)

### Arguments

`Beta` | : Matrix with beta-values, rows corresponding to probes, columns corresponding to samples.
`individualID` | : a vector where 2 replicates have the exact same value for two technical replicates. Order of samples should nmatch the samples (columns) in Beta

### Details

We expect that the values returned by the agreement function after normalization by funtooNorm to be smaller than before.

### Value

The average value of the square distance between replicates: a measure of agreement between replicates in methylation data.

### Examples

    agreement(cbind(rnorm(n = 10),rnorm(n = 10),rnorm(n = 10)),c(1,1,1))

[Package funtooNorm version 1.12.0 Index]