plotInfReps {fishpond} | R Documentation

## Plot inferential replicates for a gene or transcript

### Description

Plot inferential replicates for a gene or transcript

### Usage

    plotInfReps(
      y,
      idx,
      x,
      cov = NULL,
      cols.drk = c("dodgerblue", "goldenrod4"),
      cols.lgt = c("lightblue1", "goldenrod1"),
      xaxis
    )

### Arguments

`y` | a SummarizedExperiment (see `swish`)
`idx` | the name or row number of the gene or transcript
`x` | the name of the condition variable
`cov` | the name of the covariate for adjustment
`cols.drk` | dark colors for the lines of the boxes
`cols.lgt` | light colors for the inside of the boxes
`xaxis` | logical, whether to label the sample numbers. default is `TRUE` if there are less than 30 samples

### Value

nothing, a plot is displayed

### Examples

    y <- makeSimSwishData()
    plotInfReps(y, 3, "condition")

    y <- makeSimSwishData(n=40)
    y$batch <- factor(rep(c(1,2,3,1,2,3),c(5,10,5,5,10,5)))
    plotInfReps(y, 3, "condition", "batch")

[Package fishpond version 1.4.1 Index]