readEDS {fishpond} | R Documentation

## readEDS - a utility function for quickly reading in Alevin's EDS format

### Description

readEDS - a utility function for quickly reading in Alevin's EDS format

### Usage

    readEDS(numOfGenes, numOfOriginalCells, countMatFilename, tierImport = FALSE)

### Arguments

`numOfGenes` | number of genes
`numOfOriginalCells` | number of cells
`countMatFilename` | pointer to the EDS file, `quants_mat.gz`
`tierImport` | whether the `countMatFilename` refers to a quants tier file

### Value

a genes x cells sparse matrix, of the class `dgCMatrix`

[Package fishpond version 1.4.1 Index]