mod_ora {fcoex} | R Documentation

## # Run module overrepresentation analysis

### Description

This function was modified from the CEMiTool package. Chunks of code were retained "as is"

### Usage

    mod_ora(fc, gmt, verbose = FALSE)

    ## S4 method for signature 'fcoex'
    mod_ora(fc, gmt, verbose = FALSE)

### Arguments

`fc` | A fcoex object.
`gmt` | A gmt file with gene sets for ora analysis
`verbose` | Controls verbosity. Defaults to FALSE.

### Value

A fcoex object containing over-representation analysis data

### Examples

    data("fc")
    gmt_fname <- system.file("extdata", "pathways.gmt", package = "CEMiTool")
    gmt_in <- pathwayPCA::read_gmt(gmt_fname)
    fc <- mod_ora(fc, gmt_in)

[Package fcoex version 1.2.0 Index]