mini_pbmc3k {fcoex} | R Documentation

## Processed subset of the pbmc3k dataset from PBMC genomics

### Description

A subset with 600 sampled cells and the top 1700 variable genes from the TENxPBMCData package pbmc3k dataset.

### Usage

    data(mini_pbmc3k)

### Format

An object of class `SingleCellExperiment`

### Details

Preprocessed in accordance to OSCA (August 2019, https://osca.bioconductor.org/)

scater::normalized . PCA with 50 components. snn graph on the PCA space + louvain clustering to yield 8 clusters . UMAP already ran

### Examples

    data(mini_pbmc3k)
    mini_pbmc3k

[Package fcoex version 1.2.0 Index]