easyRNASeq accessors {easyRNASeq} | R Documentation

## Accessors for RNAseq class

### Description

These functions and generics define 'accessors' (to get and set values) for objects in the easyRNASeq package.

### Usage

    genomicAnnotation(obj)
    readCounts(obj,count=c("exons","features","genes","islands","transcripts"),
    summarization=c("bestExons","geneModels"),unique=FALSE)
    genomicAnnotation(obj) <- value

### Arguments

`obj` | An object derived from class `RNAseq`.
`count` | The type of count you want to access, 'genes','features','exons','transcripts' or 'islands'
`summarization` | If count is set to genes, precise the type of summarization, 'bestExons' or 'geneModels'
`unique` | For the 'exons' count only. Should the counts returned be unique for their identifier (i.e. the matrix row names)?
`value` | The replacement value.

### Value

Usually, the value of the corresponding slot, or other simple content described on the help page of `easyRNASeq`.

### Author(s)

Nicolas Delhomme

### Examples

    # This class is deprecated and as such there are no exmples of its use

[Package easyRNASeq version 2.24.1 Index]