prepareProteome {dagLogo} | R Documentation

## prepare proteome for background building

### Description

prepare proteome from UniProt webserver or a fasta file

### Usage

    prepareProteome(source, fasta, species = "unknown", ...)

### Arguments

`source` | An object of `UniProt.ws` or A character "UniProt".
`fasta` | fasta file name or an object of AAStringSet
`species` | an character to assign the species of the proteome
`...` | parameters could be passed to prepareProteomeByFTP.

### Value

an object of Proteome which contain protein sequence information.

### Author(s)

Jianhong Ou

### See Also

`formatSequence`, `buildBackgroundModel`

### Examples

    if(interactive()){
       library(UniProt.ws)
       availableUniprotSpecies("Drosophila melanogaster")
       UniProt.ws <- UniProt.ws(taxId=7227)
       proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster")
     }

[Package dagLogo version 1.26.2 Index]