194af6431f29ebbbb1abd742d96e4e15 *DESCRIPTION
f0a035c0557ba88df3e74a29fcc01da7 *INDEX
6e68c31055aab8c2e092a8de197e0126 *Meta/Rd.rds
e52dbe5e49ac49b3b3e31ed6f98195a4 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
93cca5d57a975bc693b2721d8adf5edb *Meta/hsearch.rds
092e04e491cebfe971303c82541414b7 *Meta/links.rds
2c4e941ef4a075c4f349b6072a077e3e *Meta/nsInfo.rds
415d2597973ed4f854c5fb6a49de32c2 *Meta/package.rds
c64a59a2709214b91097e805d01f2537 *Meta/vignette.rds
9b7f33dcc8b31c1dc890b93f6428f778 *NAMESPACE
7740f7b92ec0e9f630fdf49af9e477ae *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/cummeRbund
af2aff0dfe83dd15c212ed7d59a51418 *R/cummeRbund.rdb
aef9172ce79e2f3c243d57a434dd0f1d *R/cummeRbund.rdx
95effbbbf6135a883a9cd3fbe1620eb5 *data/sampleData.RData
5efebf5ca08d5c21bf838bc1d6ba8620 *data/sampleData.rda
5d7f299ca2333d20f04c71e008db73bd *doc/cummeRbund-example-workflow.R
1cf17ce4c24507288a5272fd72003c6b *doc/cummeRbund-example-workflow.Rnw
f3a19ff279cffa6f1deb8fef0a75431a *doc/cummeRbund-example-workflow.pdf
f47fcf892f4f44de3326807ec53c3eca *doc/cummeRbund-manual.R
7a6ad862145751c8231e2153c16c3ee6 *doc/cummeRbund-manual.Rnw
873fa61fc43b3be0d1176d396b716353 *doc/cummeRbund-manual.pdf
6d1e8c7276fc128067d78461cd4e5d50 *doc/index.html
d750866aa0c9df7b8a2416b605aad636 *extdata/cds.count_tracking
55054b333f3d37b29ec9c8d4ed247a5c *extdata/cds.diff
872cf05900e727e0d71b270d0ff53bea *extdata/cds.fpkm_tracking
bf863abcbbb9eab2b6dc4742ecfa010c *extdata/cds.read_group_tracking
7ea0edf89f0ddc5e834cb5466288d4b1 *extdata/cds_exp.diff
268c5340a737a3c211bcacc1a1c13693 *extdata/chr1_snippet.gtf
b926443705216b33fe2965e730efb46a *extdata/cuffData_schema.sql
8a5e8a2753eba7b6667dbe215a248fee *extdata/gene_exp.diff
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145fd3994f9648d5ada1d604e24c365c *extdata/genes.fpkm_tracking
c563202c95aa9aeaa08e4bf759a77df5 *extdata/genes.read_group_tracking
6157f98d3b7081152fcad9898a970a74 *extdata/isoform_exp.diff
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3df37bd586fc05d216f551cdb8a25ff8 *extdata/isoforms.fpkm_tracking
732428dd0ee431d16139debde986a780 *extdata/isoforms.read_group_tracking
05a7e6754b834b16efeab5f32b761338 *extdata/promoters.diff
5504299772cc9202185abcb03fa8c31c *extdata/read_groups.info
4302c47866e67a5ccb87015bb4cfad4b *extdata/run.info
76743810e9158eadc8454d59bd2fb5e1 *extdata/splicing.diff
2ad3e5a485eba94a838bac21160715f5 *extdata/tss_group_exp.diff
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5f6fcb9d599665971639f3b53dc40a54 *extdata/tss_groups.fpkm_tracking
dd6e1ea022372357ee00868068b80586 *extdata/tss_groups.read_group_tracking
5db80ccded39e1af96f83f1fd3674887 *help/AnIndex
7eb27fae94887f66dad2afbfb257ae15 *help/aliases.rds
547f2728f15e4814955f690e9e232fbb *help/cummeRbund.rdb
c5a346b1a766e2fc0f8752ec06090a70 *help/cummeRbund.rdx
626a1d40d2825f40b0a9cd74b0fdfae2 *help/paths.rds
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063f7e6872e9d0d41f7e58a13c11c9d3 *html/CuffFeatureSet-class.html
8ff08e2e8481ed7ce91c5fe2e87dcddf *html/CuffGene-class.html
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736bed30368de8a617266fb02539ee10 *html/CuffSet-class.html
7fd304576c4edeba5be051ac2e7751ab *html/JSdist.html
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546a6dc9e161e85f37e17887116decf2 *html/JSdistVec.html
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8321bf7bbe337ae35010d020a2119f90 *html/PINK1.html
26abd875e0a1c0e19fc6efdb1f97704a *html/QCplots.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
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df3d42a1f548351e573d96b9677f5ee1 *html/count.html
ea0df3a3b54e96443365da6f1e18ca3e *html/countMatrix.html
51bd8232f38f9e25c448340f107990be *html/csBoxplot.html
d6d867829c8d6d446a0e22bc01b28317 *html/csCluster.html
52cc0a7a1257531c0cfcb826b8918dc3 *html/csClusterPlot.html
77124dc724323b3b52515e209906f91c *html/csDendro.html
37909c29932d389160d969835341641a *html/csDensity.html
a90857f2ae15fc65f82bb67a0af9fb8a *html/csDistHeat.html
299350466a9c490b504a7f21643cbfb6 *html/csHeatmap.html
6caa8349e32195971b135f6783477665 *html/csScatter.html
aa019074444543f237956b4402b112b0 *html/csSpecificity.html
22fdd7991d0b2126ccbe3058813dd810 *html/csVolcano.html
62d482fbdf44cb04a2e1fefd25f45233 *html/cummeRbund-package.html
a80552f34869ee1b5d56b42b8e0fe238 *html/diffData.html
05c061c58d7b6c75e6685ca555a02cea *html/dimensionality.html
115a9b497573bfc1422a2f49e781ae0e *html/dispersionPlot.html
078924eb3e872e12bfc7937dcdf7c555 *html/distValues.html
0a52b3420c9e7b177916c3e3f8b37e0d *html/exploratory.html
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97da9ad076067bcdee82c87b4ea7d1fb *html/expressionPlot.html
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5ea4143cc9bd94bd4f02169747024aa0 *html/features.html
90f7c507af00647eed5a4df9338011a9 *html/findGene.html
117531c4ea54d7ceeb69c921bc2067d1 *html/findSimilar.html
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41e24838edeb15e31b3b766ff6f86254 *html/fpkmMatrix.html
ea999092081bd9eb944da126f5e65842 *html/getFeatures.html
928a82fc8b828531354d3b36ee170039 *html/getGene.html
7c73cc0f19d3afe1cab1afe7f626f4b0 *html/getGeneId.html
20e8b9d62c2eab46485ed6d6d0911c84 *html/getGenes.html
10809cc2e721e737c0f36ede6236133a *html/getLevels.html
6adf39e96fda2048bcc03e40af4fe965 *html/getRepLevels.html
21b506bb9e8277063b8eb71aa188c157 *html/getSig.html
6d1c9fcd6ac4d04de9811578a3ef9273 *html/getSigTable.html
0d6511eb6dcfa709de4211c0aea882c0 *html/makeprobs.html
3ce1bc5cecadccad349bf39305e14835 *html/makeprobsvec.html
58fe053d6cbf9d24c302b59df67b9a55 *html/readCufflinks.html
b2197b264c78c6171ef14272d23c440d *html/repFpkm.html
0ca9d4b592171747b9d7ceff95035644 *html/replicates.html
bb6937297484cdb8bd909aff0463f4b3 *html/runInfo.html
5306bd56f642a29f15e0a4c1a5a05fff *html/sampleGeneSet.html
d87d1cfeb67823e3b87eacb9c9fc4fca *html/sampleIDs.html
61020fd7f5e79de303a258aac5fbd2e8 *html/samples.html
bc907bf50128b20d48576e9fbb7ae5b8 *html/shannon.entropy.html
f60f7ec50606188272e982561a188283 *html/sigMatrix.html
c418b300973b33a65f28926ad1846a8f *reports/runReport.Rmd
ad6fede4ef3b243e7f08843092030886 *reports/styles/report_style.css
