geneSetAnalysis {cpvSNP} | R Documentation

## Data to run gene set analysis methods

### Description

A list including the following components:

`arrayData` – a data.frame of dimension 119487 rows and 4 columns including P-values, SNP ids, position and chromosome for a GWAS experiment;

`geneSets` – a GeneSetCollection containing gene Entrez ids;

`ldMat` – a matrix of dimension 871 x 871 holding linkage disequilibrium values;

`indepSNPs` – a list containing 302 independent SNP ids;

### Usage

    geneSetAnalysis

### Examples

        data(geneSetAnalysis)
        head(geneSetAnalysis$arrayData)

[Package cpvSNP version 1.20.0 Index]