cola_report-ConsensusPartitionList-method {cola} | R Documentation

## Make HTML report from the ConsensusPartitionList object

### Description

Make HTML report from the ConsensusPartitionList object

### Usage

    ## S4 method for signature 'ConsensusPartitionList'
    cola_report(object, output_dir = getwd(), mc.cores = 1,
        title = "cola Report for Consensus Partitioning", env = parent.frame())

### Arguments

`object` | A `ConsensusPartitionList-class` object.
`output_dir` | The output directory where the report is saved.
`mc.cores` | Multiple cores to use.
`title` | Title of the report.
`env` | Where the objects in the report are found, internally used.

### Details

The `ConsensusPartitionList-class` object contains results for all top-value methods and all partitioning methods. This function generates a HTML report which contains all plots and tables for every combination of top-value method and partitioning method.

The report generation may take a while because it generates A LOT of heatmaps.

Examples of reports can be found at https://jokergoo.github.io/cola_collection/ .

### Value

No value is returned.

### Author(s)

Zuguang Gu <z.gu@dkfz.de>

### Examples

    ## Not run:
    data(cola_rl)
    cola_report(cola_rl[c("SD", "MAD"), c("hclust", "skmeans")], output_dir = "~/test_cola_cl_report")

    ## End(Not run)

[Package cola version 1.4.1 Index]