geneSymbol {coexnet} | R Documentation

## Create a table relating probesets with genes

### Description

From the information in the .soft file, creates a data.frame with two columns. In the first one, the probeset names. In the second one, the name of the corresponding genes.

### Usage

    geneSymbol(GPL, directory = ".")

### Arguments

`GPL` | The GPL ID.
`directory` | The path file where the .soft file is. By default is the current path file.

### Value

A data.frame with two columns, in the first one, the probesets and in the second one, the corresponding gene to each probeset.

### Author(s)

Juan David Henao <judhenaosa@unal.edu.co>

### Examples

    # Creating the table with probesets and genes/IDs

    gene_table <- geneSymbol(GPL = "GPL2025",directory = system.file("extdata",package = "coexnet"))

    # Cleaning the NA information

    gene_na <- na.omit(gene_table)

    # Cleaning gene/ID information empty

    final_table <- gene_na[gene_na$ID != "",]

    head(final_table)

[Package coexnet version 1.10.3 Index]