cor_to_call_rank {clustifyr} | R Documentation

## get ranked calls for each cluster

### Description

get ranked calls for each cluster

### Usage

    cor_to_call_rank(
      cor_mat,
      metadata = NULL,
      cluster_col = "cluster",
      collapse_to_cluster = FALSE,
      threshold = 0,
      rename_prefix = NULL,
      top_n = NULL
    )

### Arguments

`cor_mat` | input similarity matrix
`metadata` | input metadata with tsne or umap coordinates and cluster ids
`cluster_col` | metadata column, can be cluster or cellid
`collapse_to_cluster` | if a column name is provided, takes the most frequent call of entire cluster to color in plot
`threshold` | minimum correlation coefficent cutoff for calling clusters
`rename_prefix` | prefix to add to type and r column names
`top_n` | the number of ranks to keep, the rest will be set to 100

### Value

dataframe of cluster, new ident, and r info

### Examples

    res <- clustify(
        input = pbmc_matrix_small,
        metadata = pbmc_meta,
        cluster_col = "classified",
        ref_mat = cbmc_ref
    )

    cor_to_call_rank(res, threshold = "auto")

[Package clustifyr version 1.0.0 Index]