binarize_expr {clustifyr} | R Documentation

## Binarize scRNAseq data

### Description

Binarize scRNAseq data

### Usage

    binarize_expr(mat, n = 1000, cut = 0)

### Arguments

`mat` | single-cell expression matrix
`n` | number of top expressing genes to keep
`cut` | cut off to set to 0

### Value

matrix of 1s and 0s

### Examples

    pbmc_avg <- average_clusters(
        mat = pbmc_matrix_small,
        metadata = pbmc_meta,
        cluster_col = "classified"
    )

    mat <- binarize_expr(pbmc_avg)
    mat[1:3, 1:3]

[Package clustifyr version 1.0.0 Index]