aggregate_by_cell_bin {cicero} | R Documentation

## Aggregate count CDS by groups of cells

### Description

Aggregates a CDS based on an indicator column in the `pData` table

### Usage

    aggregate_by_cell_bin(cds, group_col)

### Arguments

`cds` | A CDS object to be aggregated
`group_col` | The name of the column in the `pData` table that indicates the cells assignment to its aggregate bin.

### Details

This function takes an input CDS object and collapses cells based on a column in the `pData` table by summing the values within the cell group.

### Value

A count cds aggregated by group_col

### Examples

      data("cicero_data")
      #input_cds <- make_atac_cds(cicero_data, binarize = TRUE)
      #pData(input_cds)$cell_subtype <- rep(1:10, times=20)
      #binned_input_lin <-aggregate_by_cell_bin(input_cds, "cell_subtype")

[Package cicero version 1.6.2 Index]