create_fusion_report {chimeraviz} | R Documentation

## Create a Fusion Report

### Description

This function will create a html report with an overplot and a sortable, searchable table with the fusion data.

### Usage

    create_fusion_report(fusions, output_filename, quiet = TRUE)

### Arguments

`fusions` | A list of Fusion objects.
`output_filename` | Output html-file filename.
`quiet` | Parameter passed to rmarkdown::render() to toggle its output.

### Value

Creates a html report with an overplot and a sortable, searchable table with the fusion data.

### Examples

    # Load data
    defuse833ke <- system.file(
      "extdata",
      "defuse_833ke_results.filtered.tsv",
      package="chimeraviz")
    fusions <- import_defuse(defuse833ke, "hg19", 3)
    # Temporary file to store the report
    random_filename <- paste0(
      paste0(sample(LETTERS, 5, replace = TRUE), collapse=''),
      ".png"
    )
    # Create report
    create_fusion_report(fusions, random_filename)
    # Delete the file
    file.remove(random_filename)

[Package chimeraviz version 1.14.0 Index]