plotBioMatrix {caOmicsV} | R Documentation

## Default Plot Method for caOmicsV bioMatrix Layout Plot

### Description

A sample way to plot sample information and genomic data with default settings.

### Usage

        plotBioMatrix(dataSet, summaryType=c("text", "bar"), summarybyRow=TRUE,
            heatmapMax=NULL, heatmapMin=NULL, heatmapColor="BlueWhiteRed")

### Arguments

`dataSet` | an object, returned from method of getPlotDataSet(), with all plot data
`summaryType` | character vector, either "text" or "bar", for plot type of summary data
`summarybyRow` | logic, if the summary data is for each row or for each column
`heatmapMax` | numeric, maximum value for heatmap plot, set to NULL to use the maximum value in input data.
`heatmapMin` | numeric, minimum value for heatmap plot, set to NULL to use the minimum value in input data.
`heatmapColor` | character vector,one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed" , or "YellowToRed"

### Value

None

### Author(s)

Henry Zhang

### Examples

        data(biomatrixPlotDemoData)
        plotBioMatrix(biomatrixPlotDemoData, summaryType="text",
            summarybyRow=TRUE, heatmapMax=3, heatmapMin=-3,
            heatmapColor="BlueWhiteRed")

[Package caOmicsV version 1.18.0 Index]