plotBioNetPoints {caOmicsV} | R Documentation

## Point Plot on caOmicsV bioNetCircos Layout

### Description

Point plot on caOmicsv bioNetCircos layout. This method plots one track of points for every node. bioNetCircos layout and graphic device must be initialized first.

### Usage

        plotBioNetPoints(dataValues, maxValue=NULL,
                minValue=NULL, outer, inner,
                plotColors=rep("black", ncol(dataValues)),
                sizeByValue=FALSE, pch=".")

### Arguments

`dataValues` | numeric matrix of plot data
`maxValue` | numeric, the biggest value of plot data
`minValue` | numeric, the smallest value of plot data
`outer` | non-negative numeric, the outer boundary of plot area from node center
`inner` | non-negative numeric, the inner boundary of plot area from node center
`plotColors` | character vector or vector of R color specification, colors for each sample
`sizeByValue` | logic, if true, the data value will be used for point size
`pch` | character for point type, same as the one in par()

### Value

None

### Author(s)

Henry Zhang

### Examples

        data(bionetPlotDemoData)
        expr <- bionetPlotDemoData$heatmapData[[1]]
        bioNet <- bc3net(expr)

        initializeBioNetCircos(bioNet, totalSamples=60)
        showBioNetNodesLayout()
        plotBioNetPoints(expr, outer=3, inner=2)

[Package caOmicsV version 1.18.0 Index]