BiocycPathwayGenes {brendaDb} | R Documentation

## Get all genes involved in a BioCyc pathway.

### Description

Get all genes involved in a BioCyc pathway.

### Usage

    BiocycPathwayGenes(org.id = "HUMAN", pathway)

### Arguments

`org.id` | The identifier for the organism database in BioCyc, e.g. ECOLI, HUMAN, META, AFER243159
`pathway` | A case-sensitive pathway object identifier, e.g. PWY66-400, LYSINE-DEG1-PWY.

### Value

If the pathway is found, returns a tibble with columns `BiocycGene`, `BiocycProtein`, `Symbol` and `Ensembl`, where `BiocycGene` and `BiocycProtein` are the gene and protein IDs in the BioCyc database, respectively. Returns NULL if the pathway ID is not found.

### Examples

    BiocycPathwayGenes("HUMAN", "PWY66-400")
    BiocycPathwayGenes("HUMAN", "TRYPTOPHAN-DEGRADATION-1")

[Package brendaDb version 1.2.0 Index]