vstFromLumi {blima} | R Documentation

## Function from LGPL lumi package 2.16.0

### Description

This function is derived from copy and paste of lumi::vst function. Since lumi package has extensive imports I decided to hardcode this function to the blima instead of importing lumi package.

### Usage

    vstFromLumi(u, std, nSupport = min(length(u), 500), backgroundStd = NULL,
        lowCutoff = 1/3)

### Arguments

`u` | The mean of probe beads
`std` | The standard deviation of the probe beads
`nSupport` | Something for c3 guess.
`backgroundStd` | Estimate the background variance c3. Input should be variance according to article, not SD.
`lowCutoff` | Something for c3 guess.

### Author(s)

authors are Pan Du, Simon Lin, the function was edited by Vojtěch Kulvait

### References

http://www.bioconductor.org/packages/release/bioc/html/lumi.html

[Package blima version 1.22.0 Index]