Encoding: UTF-8
Package: blima
Type: Package
Title: Tools for the preprocessing and analysis of the Illumina
        microarrays on the detector (bead) level
Version: 1.22.0
Date: 2017-09-23
Author: Vojtěch Kulvait
Maintainer: Vojtěch Kulvait <kulvait@gmail.com>
Description: Package blima includes several algorithms for the preprocessing of Illumina microarray data. It focuses to the bead level analysis and provides novel approach to the quantile normalization of the vectors of unequal lengths. It provides variety of the methods for background correction including background subtraction, RMA like convolution and background outlier removal. It also implements variance stabilizing transformation on the bead level. There are also implemented methods for data summarization. It also provides the methods for performing T-tests on the detector (bead) level and on the probe level for differential expression testing.
License: GPL-3
LazyLoad: yes
Depends: R(>= 3.3)
Imports: beadarray(>= 2.0.0), Biobase(>= 2.0.0), Rcpp (>= 0.12.8),
        BiocGenerics, grDevices, stats, graphics
LinkingTo: Rcpp
Suggests: xtable, blimaTestingData, BiocStyle, illuminaHumanv4.db,
        lumi, knitr
URL: https://bitbucket.org/kulvait/blima
biocViews: Microarray, Preprocessing, Normalization,
        DifferentialExpression, GeneRegulation, GeneExpression
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/blima
git_branch: RELEASE_3_11
git_last_commit: f8ad491
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: yes
Packaged: 2020-04-28 04:00:18 UTC; biocbuild
Built: R 4.0.0; i386-w64-mingw32; 2020-04-28 17:06:34 UTC; windows
Archs: i386, x64
